Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs57585353 | chr8:50753017 | A/C | 1.84E-5 | 214 | 10.33 | 8.72 | 0.98 | KM Plot |
| BLCA | rs57599522 | chr8:50773126 | GA/G | 2.53E-5 | 215 | 10.13 | 9.07 | 1.87 | KM Plot |
| BLCA | rs57692518 | chr8:50797692 | A/G | 2.42E-5 | 216 | 10.33 | 9.07 | 1.87 | KM Plot |
| BLCA | rs57936990 | chr15:41012575 | C/T | 2.15E-6 | 213 | 10.7 | 7.43 | 5.43 | KM Plot |
| BLCA | rs57998519 | chr18:5253847 | G/A | 5.74E-8 | 213 | 8.6 | 13.2 | 4.85 | KM Plot |
| BLCA | rs58064960 | chr11:10130734 | G/GTATATA | 4.63E-5 | 208 | 9.1 | 12.13 | 5.43 | KM Plot |
| BLCA | rs5822857 | chr18:5286468 | A/AT | 3.05E-5 | 206 | 8.6 | 14.1 | 4.97 | KM Plot |
| BLCA | rs58458955 | chr15:40972188 | G/A | 1.85E-6 | 215 | 10.67 | 7.1 | 6.13 | KM Plot |
| BLCA | rs5852125 | chr3:117564986 | C/CA | 0.000131 | 215 | 6.57 | 2.48 | 10.13 | KM Plot |
| BLCA | rs58597929 | chr8:50781437 | A/G | 0 | 214 | 10.6 | 8.72 | 0.98 | KM Plot |
| BLCA | rs58773749 | chr18:5270335 | G/A | 8.6E-10 | 212 | 8.7 | 13.33 | 4.85 | KM Plot |
| BLCA | rs5891333 | chr8:50842823 | T/TA | 1.19E-5 | 212 | 0.98 | 8.4 | 10.53 | KM Plot |
| BLCA | rs589650 | chr15:40778303 | A/G | 3.18E-5 | 215 | 10.9 | 6.8 | 5.43 | KM Plot |
| BLCA | rs59405147 | chr8:50772365 | G/A | 2.59E-5 | 215 | 10.33 | 9.25 | 1.87 | KM Plot |
| BLCA | rs59654927 | chr15:40972103 | C/T | 2.17E-6 | 215 | 10.68 | 6.97 | 6.13 | KM Plot |